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History of AFNI updates Previous Message Next Message Message List New Topic Print View jimmy601521 May 20, 2017 01:18PM Registered: 5 years ago Posts: 6 Dear experts I am facing some problems when installing AFNI, and below is my check report. ps. i believed that i have installed fink alreadyThanks a lot!-------------------------------- general ---------------------------------architecture: 64bit system: Darwinrelease: 16.7.0version: Darwin Kernel Version 16.7.0: Tue May 9 11:48:28 PDT 2017; root:xnu-3789.70.916/RELEASE_X86_64distribution: 10.12.6 x86_64number of CPUs: 4apparent login shell: tcshshell RC file: .cshrc (exists)--------------------- AFNI and related program tests ---------------------which afni : /Users/dogdogman/abin/afniafni version : Precompiled binary macosx_10.7_Intel_64: May 12 2017 : AFNI_17.1.05AFNI_version.txt : AFNI_17.1.05, macosx_10.7_Intel_64, May 12 2017which python : /usr/bin/pythonpython version : 2.7.10which R : /usr/local/bin/RR version : R version 3.4.0 (2017-04-21) -- "You Stupid Darkness"which tcsh : /bin/tcshinstances of various programs found in PATH: afni : 1 (/Users/dogdogman/abin/afni) R : 1 (/Library/Frameworks/R.framework/Versions/3.4/Resources/bin/R) python : 1 (/usr/bin/python) python2 : 0 python3 : 0 testing ability to start various programs... afni : success suma : success 3dSkullStrip : success uber_subject.py : success 3dAllineate : FAILURE dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib Referenced from: /Users/dogdogman/abin/3dAllineate Reason: image not found 3dRSFC : success SurfMesh : successchecking for R packages... rPkgsInstall -pkgs ALL -check : successchecking for $HOME files... .afnirc : found .sumarc : found .afni/help/all_progs.COMP : found------------------------------ python libs -------------------------------** python module not found: PyQt4python binaries under /sw/bin: /sw/bin/python (sym link to /sw/bin/python2.7) /sw/bin/python2.7 -------------------------------- env vars --------------------------------PATH = /usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/dogdogman/abinPYTHONPATH = /Users/dogdogman/PythonR_LIBS = LD_LIBRARY_PATH = DYLD_LIBRARY_PATH (sub-shell) = DYLD_FALLBACK_LIBRARY_PATH (sub-shell) = ------------------------------ data checks -------------------------------data dir : missing AFNI_data6data dir : missing AFNI_demosdata dir : missing suma_demodata dir : missing afni_handoutsatlas : found TT_N27+tlrc under /Users/dogdogman/abin------------------------------ OS specific -------------------------------++ found PyQt4 under /sw/lib/qt4-mac/lib/python2.7/site-packages++ found 1 dylib files under '/opt/X11/lib/flat_namespace' -- found 'libXt' dylib files: /opt/X11/lib/flat_namespace/libXt.6.dylib-- recent OS X, cannot check DYLD_LIBRARY_PATH in cur shell, cheating ...** env var DYLD_LIBRARY_PATH not set to contain /opt/X11/lib/flat_namespace========================= summary, please fix: =========================* AFNI programs show FAILURE* insufficient data for AFNI bootcamp* consider installing fink* consider adding /sw/lib/qt4-mac/lib/python2.7/site-packages to PYTHONPATH* please set DYLD_LIBRARY_PATH to /opt/X11/lib/flat_namespace in tcsh Reply Quote RSS Subject Author Posted AFNI installation problem jimmy601521 May 20, 2017 01:18PM Re: AFNI installation problem ptaylor May 21, 2017 03:32PM Re: AFNI installation problem jimmy601521 May 28, 2017 02:19PM Sorry, only registered users may post in this forum. Click here to login
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IBM AIX is celebrating 35 years of innovation and enhanced capabilities with the new AIX 7.3. The future of UNIX in an enterprise open standards-based UNIX operating system for the Power architecture.
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